Rajkumar Josphine Vs Superintendent, Central Tax

Date: July 8, 2025

Court: High Court
Bench: Madras
Type: Writ Petition
Judge(s)/Member(s): KRISHNAN RAMASAMY

Subject Matter

GST Department Cannot Deny ITC Claims Now Validated by Section 16(5) of CGST Act

Input Tax CreditLimitation

Summary

This writ petition was filed by a registered GST dealer to challenge an order from the respondent-Department. The order reversed or denied the petitioner's claim for Input Tax Credit (ITC) and imposed tax, penalty, and interest. The petitioner and respondent's counsels both agreed that the issue in this case is identical to one previously decided by the High Court in a common order dated October 17, 2024, in W.P.Nos.25081 of 2023 & etc. batch.

The precedent case involved taxpayers who, due to various difficulties such as financial constraints from the COVID-19 lockdown, health issues, or fire accidents, were unable to file their GSTR-3B returns and claim ITC within the original prescribed deadline under Section 16(4) of the CGST Act. The respondent-Department had issued show cause notices and passed orders reversing these ITC claims, arguing they were time-barred.

However, after these petitions were filed, the 53rd GST Council Meeting on June 22, 2024, recommended extending the deadline for availing ITC for Financial Years 2017-18 to 2020-21. This led to the enactment of the Finance Act (No.2) of 2024 and the insertion of a new Section 16(5) into the CGST Act. This new section clarifies that taxpayers are entitled to claim ITC for those financial years in any return filed up to November 30, 2021, overriding the original deadline in Section 16(4). The court in the precedent case held that this amendment came into force with retrospective effect from July 1, 2017, rendering the department's impugned orders unsustainable.

Ruling:

Based on the precedent, the High Court allowed the present writ petition and issued the following directions:

  • The impugned order dated February 27, 2025, is quashed to the extent that it pertains to ITC claims that were barred by Section 16(4) but are now permissible under the newly inserted Section 16(5).

  • The respondent-Department is restrained from initiating any recovery proceedings against the petitioner based on this specific issue of limitation.

  • If the petitioner's bank account was frozen due to the impugned order, the department is directed to take immediate steps to de-freeze it.

  • Any recovery orders proposed during the pendency of the writ petition must be dropped upon the petitioner's submission of a copy of this order.

The writ petition was allowed, and all connected miscellaneous petitions were closed.

FULL TEXT OF THE JUDGMENT/ORDER OF MADRAS HIGH COURT

This writ petition has been filed by the petitioner/taxpayer, who is registered dealer on the files of the respondent-Department under the provisions of the Goods and Service Tax Act, 2017 (GST Act)/ Central Goods and Services Tax Act ( CGST Act) as the case may be, challenging the orders passed by the respondent-Department, whereby, their claim of ITC was reversed/negatived and consequently, the petitioner was directed to pay tax/penalty/interest.

2. When this writ petition was taken up for hearing, the learned counsel for the petitioner and learned Senior Standing Counsel for the respondent submitted that the issue involved in the present writ petition has been squarely covered by the common order passed by this Court in W.P.Nos.25081 of 2023 & etc. batch dated 17.10.2024, wherein, this Court has categorically held in Paragraph Nos.9 to 12 as under:

“9. The petitioners in all these Writ Petitions are registered dealers on the files of the respondent-Department under the provisions of the Goods and Service Tax Act, 2017/CGST Act 2017. Though the petitioners have filed GSTR-1 returns in time, however, insofar as claim of ITC is concerned, since the petitioners were faced with certain difficulties, such as Financial constraints (as there was complete lock down due to outbreak Covid-19) health related ailments, fire accidents, they were unable to file GSTR-3B returns, which prompted them not raising their claim ITC in time before the prescribed date. Whereas, the respondent-Department without considering such vital aspects and that reasons for the delay is not deliberate, issued the show cause notices to the petitioners, proposing to reverse the ITC availed and went to the extreme level of confirming the proposals contained in the show cause notices by passing the impugned orders, where by, the claim made by the petitioners for ITC was reversed and the petitioners have been directed to tax/penalty/interest. Aggrieved against the impugned orders, the petitioners are before this Court by way of present Writ Petitions seeking for setting aside the impugned orders.

10. After the filing of these Writ Petitions, certain development took place, i.e. that 53rd GST Council meeting was held on 22.06.2024, and during the said Meeting, the GST Council recommended for extension of the deadline for availing ITC on any invoice or debit note under Section 16(4) of the CGST Act and this extension would be applicable to any GSTR-3B returns filed for the Fys 2017-18, 2018-19, 2019-20 and 2020-21 with a new deadline deemed to be as ”30.11.2021”, to which, the Presidential Assent was also obtained by the Government of India on 16.08.2024, whereby, the financial proposals of the Central Government for the Financial Year 2024-25 was given effect to vide Finance Act, (No.2) of 2024, and in view of the aforesaid enactment, the Ministry of Finance (Department of Revenue) Central Board of Indirect Taxes and Customs, issued a Notification, bearing No.17 of 2024-Central Tax, dated 27.09.2024, pursuant to which, a Circular No.237/31/2024-GST was issued by the Central Board of Indirect Taxes and Customs, which was addressed to all the Principal Chief Commissioners /Chief Commissioners/Principal Commissioners/Commissioners of Central Tax (All), thereby, clarifying the issues regarding implementation of provision of sub-section (5) and sub-section (6) in Section 16 of CGST Act, 2017, the impugned orders are no longer sustainable and liable to be quashed. In this context, it would be apposite to refer to both Section 16(4) of the CGST Act, 2017, as well as amendment made to Section 16 (4) by interpolations of sub-sections 16 (5) and (6), and by insertion of sub-section (5) to Section 16, which are extracted herein under:-

Section 16 (4)

”A registered person shall not be entitled to take input tax credit in respect of any invoice or debit note for supply of goods or services or both after the thirtieth day of November following the end of financial year to which such invoice or debit note pertains or furnishing of the relevant annual return, whichever is earlier.

Section 16 (5) :-

”Notwithstanding anything contained in sub-section (4), in respect of an invoice or debit note for supply of goods or services or both pertaining to the Financial Years 2017-18, 2018-19, 2019-20 and 2020-21, the registered persons shall be entitled to take input tax credit in any return under section 39 which is filed upto the thirtieth day of November, 2021.

10.1 Thus, a perusal of above Section 16 (5) makes it clear that ‘notwithstanding anything contained in sub-section 4, referred to above, in respect of any invoice or debit note for supply of goods or services or both pertaining to the Fys 2017-18 to 2020-21, the registered persons shall be entitled to take ITC in any return under section 39 which is filed upto the 30th day of November, 2021.

10.2 Thus, this Court considering the fact that the issue involved in all these Writ Petitions is only with regard to the availment of ITC, which is barred by limitation in terms of Section 16 (4) of the CGST Act, and in the light of the subsequent developments took place, whereby, Section 16 of the CGST Act was amended and sub-section (5) was inserted to Section 16, which came into force with retrospective effect from 01.07.2017, the petitioners are entitled to avail ITC in respect of GSTR-3B filed in respect of FYs 2017-18, 2018-19, 2019-20 and 2020-21 as the case may be, on or before 30.11.2021, is inclined to quash the impugned orders.

11. Accordingly, this Court passes the following orders:

i) The orders impugned in all Writ Petitions are quashed insofar as it relates to the claim made by the petitioners for ITC which is barred by limitation in terms of Section 16 (4) of the CGST Act, 2017 but, within the period prescribed in terms of Section 16 (5) of the said Act.

ii) Therefore, the respondent-Department is restrained from initiating any proceedings against the petitioners by virtue of the impugned orders based on the issue of limitation.

iii) In view of the fact that the impugned orders are quashed, the respondent-Department is directed to take immediate steps towards de-freezure of the concerned petitioners bank accounts, which have been freezed in furtherance of the impugned orders, by sending intimation to the concerned bankers.

iv) In the event, in the interregnum, i.e. during the pendency of these Writ Petitions, if any orders are proposed to be passed towards recovery, same shall be dropped immediately upon production of the order copy by the petitioners, in whichever case, where, there is no interim order.

v) It is also made clear that if at all, if there is any tax amounts were collected from the petitioners based on the impugned assessment orders from the cash ledgers/credit ledgers of the petitioners concerned, the same shall be refunded to them or by means of orders of this Court or even in the absence of any order from this Court, if any amount is deposited either in the cash ledgers/credit ledgers of the petitioners concerned, the same is permitted to be utilized/adjusted by the petitioners towards payment of future tax.

vi) Insofar as the apprehension expressed by the learned Additional Advocate General for the respondent-Department that in certain Writ Petition apart from the issue on limitation, challenges have also been made to the order related to issues such as discrepancies in availing the ITC/wrong availment of ITC/excess claim of ITC/Fake ITC claim, as the case may be, or such other issues, liberty is be granted to the respondent-Department to proceed against the assessees/petitioners in furtherance of the impugned orders in accordance with law.

12. In the result, all the Writ Petitions are allowed on the aforesaid terms. No costs. Consequently, connected Miscellaneous Petitions are closed.”

13. Therefore, the learned counsel for the petitioner submitted that the above said order will hold good for the present writ petition also and hence, prayed to dispose of the writ petition. The learned Senior Standing Counsel appearing for the respondent fairly acceded to the same.

3. Therefore, the learned counsel for the petitioner submitted that the above said order will hold good for the present writ petition also and hence, prayed to dispose of the writ petition. The learned Senior Standing Counsel appearing for the respondent fairly acceded to the same.

4. In view of the above, this Court passes/issues the following orders/directions:

(i) The impugned order dated 27.02.2025 is quashed insofar as it relates to the claim made by the petitioner for ITC which is barred by limitation in terms of Section 16(4) of the CGST Act, 2017, but, within the period prescribed in terms of Section 16(5) of the said Act.

(ii) Therefore, the respondent-Department is restrained from initiating any proceedings against the petitioner by virtue of the impugned order based on the issue of limitation.

(iii) In view of the fact that the impugned order is quashed, the respondent-Department is directed to take immediate steps towards de-freezure of the petitioner’s bank account by sending intimation to the concerned banker, if the petitioner’s bank account was freezed in furtherance of the impugned order.

(iv) In the event, in the interregnum, i.e. during the pendency of this writ petition, if any orders are proposed to be passed towards recovery, same shall be dropped immediately upon production of the copy of this order by the petitioner, in whichever case, where, there is no interim order.

5. Accordingly, this Writ Petition is allowed on the above terms. No costs. Consequently, connected Miscellaneous Petition is closed.